T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 CYS-3   PHE-4  7.8 6.8 -2.1 -9.2 42.1 49.1 20.3
 PHE-4   GLU-5  6.6 5.5 0.1 1.6 155.3 162.6 -8.2
 GLU-5   MET-6  8.1 7.2 -5.7 4.1 79.5 78.5 0.3
 MET-6   LEU-7  7.6 7.0 -8.4 8.5 79.0 79.9 14.1
 LEU-7   ARG-8  3.9 3.6 1.5 -1.5 146.6 145.8 2.2
 ARG-8   ILE-9  3.6 2.6 1.9 8.3 138.7 142.9 -22.3
 ILE-9   ASP-10  5.2 4.8 -0.8 4.0 93.5 90.0 1.3
 ASP-10   GLU-11  5.6 5.5 2.0 10.4 93.5 101.2 -9.1
 GLU-11   GLY-12  3.2 3.5 11.5 -26.5 131.5 143.5 34.4
 GLY-12   LEU-13  0.4 1.1 49.2 -32.3 64.7 71.3 40.6
 LEU-13   ARG-14  3.8 3.8 -10.9 -1.4 49.4 46.2 15.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-70   VAL-71  4.3 4.7 6.2 -3.4 114.6 109.9 -5.0
 VAL-71   ASP-72  2.1 1.5 0.1 1.5 175.6 171.5 -12.1
 ASP-72   ALA-73  3.4 3.2 -6.5 0.4 63.9 60.4 20.0
 ALA-73   ALA-74  3.5 4.0 3.6 -3.3 87.5 91.3 8.3
 ALA-74   VAL-75  2.2 3.0 0.7 4.6 139.0 137.3 3.1
 VAL-75   ARG-76  1.9 1.7 -5.5 -6.2 22.6 26.0 45.7
 ARG-76   GLY-77  1.0 1.6 8.9 2.0 99.0 104.5 -33.4
 GLY-77   ILE-78  4.5 5.1 -2.8 -1.9 78.1 70.7 -8.9
 ILE-78   LEU-79  5.6 5.8 -11.1 5.6 19.9 15.3 23.3
 LEU-79   ARG-80  4.6 4.1 -9.4 11.9 42.6 45.6 -2.8
 ARG-80   ASN-81  5.8 5.1 -23.9 22.3 98.9 85.9 26.1
 ASN-81   ALA-82  9.1 8.6 17.4 -8.6 108.9 122.6 -10.3
 ALA-82   LYS-83  11.5 10.7 13.9 -10.8 51.1 61.7 2.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees