T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-8   ILE-9  3.9 2.9 1.0 8.6 141.0 144.0 -13.5
 ILE-9   ASP-10  5.4 4.9 -3.9 7.9 91.5 87.2 0.6
 ASP-10   GLU-11  5.6 5.4 1.1 11.0 93.4 102.8 -12.5
 GLU-11   GLY-12  3.0 3.2 11.7 -28.4 129.4 140.6 35.3
 GLY-12   LEU-13  0.2 0.9 50.9 -36.5 62.6 68.4 39.4
 LEU-13   ARG-14  3.9 3.9 -14.1 -2.6 50.5 46.7 19.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-70   VAL-71  3.9 4.4 10.6 -6.2 113.2 106.6 12.1
 VAL-71   ASP-72  1.8 1.3 -0.8 4.0 2.6 4.2 -21.4
 ASP-72   ALA-73  2.9 2.7 -4.3 -1.0 65.5 61.8 21.3
 ALA-73   ALA-74  3.0 3.6 0.8 2.5 85.2 90.1 1.0
 ALA-74   VAL-75  2.5 3.2 -4.5 7.3 41.9 44.1 7.5
 VAL-75   ARG-76  2.5 2.2 -8.3 -8.6 22.9 23.5 43.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees