Glutamate Receptor 2, Linker, Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-106   GLY-107  5.5 5.6 5.3 -1.7 31.1 32.9 18.2
 GLY-107   ILE-108  2.7 2.6 -5.1 -3.1 73.2 71.3 44.0
 ILE-108   SER-109  1.2 1.2 2.5 6.0 107.0 106.7 12.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-207   VAL-208  7.8 7.6 2.5 4.4 121.0 118.4 -21.1
 VAL-208   GLY-209  10.4 10.3 -6.8 -6.0 18.3 24.2 73.7
 GLY-209   GLY-210  10.7 10.4 10.5 -19.4 99.3 91.3 -22.3
 GLY-210   ASN-211  9.1 8.3 14.8 -6.3 96.3 105.0 -28.2
 ASN-211   LEU-212  5.4 4.7 -9.0 7.1 13.1 8.7 19.7
 LEU-212   ASP-213  4.1 3.7 12.6 -16.2 122.8 122.7 33.5
 ASP-213   SER-214  2.9 2.9 -0.4 -0.1 128.3 130.1 8.4
 SER-214   LYS-215  5.8 5.8 2.7 -6.1 94.6 98.5 7.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees