Thermolysin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-101   SER-102  2.2 2.2 0.9 -1.2 161.0 161.5 51.1
 SER-102   SER-103  1.4 1.4 0.5 -0.8 106.0 105.9 14.6
 SER-103   VAL-104  2.5 2.5 1.8 -1.6 174.2 174.5 -46.2
 VAL-104   HIS-105  2.7 2.8 0.1 0.7 111.2 110.9 23.1
 HIS-105   TYR-106  5.5 5.6 0.3 -0.8 72.6 72.8 -34.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-123   ASP-124  4.6 4.5 0.7 0.6 54.0 54.0 87.8
 ASP-124   GLY-125  3.1 3.1 -2.5 2.1 154.8 154.4 -26.8
 GLY-125   ASP-126  4.1 4.0 -1.1 2.1 127.7 129.3 58.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees