Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  4.2 4.2 -19.7 6.8 51.5 52.1 37.1
 LEU-109   GLY-110  0.6 0.6 14.8 12.9 54.1 58.4 66.3
 GLY-110   ILE-111  3.1 3.1 -6.8 -3.5 51.5 47.8 18.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.6 8.8 -4.8 5.0 40.3 35.3 7.4
 ASP-216   SER-217  5.5 5.7 -1.0 -1.1 103.9 103.4 10.7
 SER-217   LYS-218  1.7 2.0 -7.0 -17.2 84.8 74.4 36.0
 LYS-218   GLY-219  2.7 2.5 12.4 8.2 67.3 52.5 35.6
 GLY-219   TYR-220  5.1 5.1 18.1 -2.3 71.1 72.6 11.8
 TYR-220   GLY-221  8.2 8.4 11.5 -8.4 115.1 117.3 -2.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees