Ryanodine Receptor 1 Chimera

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-27   SER-28  6.4 7.8 62.3 -2.5 76.2 90.0 18.8
 SER-28   GLU-29  4.1 5.6 14.0 15.1 96.5 105.2 -25.9
 GLU-29   ARG-30  7.6 9.2 -17.7 4.0 18.1 11.5 31.2
 ARG-30   ILE-31  8.0 8.8 6.4 -18.7 113.9 107.7 35.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-75   GLU-76  13.2 12.9 -17.8 2.4 63.5 58.3 114.0
 GLU-76   TYR-77  11.0 10.5 0.6 -7.8 65.3 80.9 -10.9
 TYR-77   ASP-78  10.8 10.4 8.0 5.8 43.8 23.1 30.1
 ASP-78   ARG-79  9.0 9.8 8.7 -7.5 107.4 88.0 15.2
 ARG-79   ASN-80  6.9 6.8 2.0 -10.3 120.4 112.2 17.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-96   GLU-97  10.0 9.9 19.1 -7.9 92.4 74.6 34.6
 GLU-97   LYS-98  12.4 11.9 0.8 14.8 148.9 128.0 -33.3
 LYS-98   GLU-99  13.0 12.1 6.4 47.4 108.7 136.0 478.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-128   LEU-129  5.9 5.6 -48.4 22.6 85.1 64.3 40.6
 LEU-129   SER-130  2.9 2.7 -4.4 -14.4 139.6 120.6 -48.2
 SER-130   LEU-131  4.0 2.6 1.1 43.2 69.8 71.5 66.7
 LEU-131   VAL-132  1.1 1.2 -31.0 21.0 49.6 46.2 2.4
 VAL-132   ASP-133  2.4 2.9 12.4 -1.7 91.6 86.5 -2.2
 ASP-133   LEU-134  6.2 6.4 -11.8 3.3 31.0 22.4 34.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees