DynDom - Protein Domain Motions

Auxin Efflux Carrier Component 8

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Auxin Efflux Carrier Component 8
Conformer 1 (PDB)	7qpc (A)
Conformer 2 (PDB)	7qp9 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	40	0.67	3 - 32 262 - 271
2	184	1.56	2 - 2 70 - 162 223 - 227 281 - 365
3	72	0.76	33 - 69 222 - 222 228 - 261

Sequence

`__2__________________________30_____________________________________69__________________________________________________` `7qpc(A) : MGISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIISENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTL` `:` `7qp9(A) : MGISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIISENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTL` `__2__________________________30_____________________________________69__________________________________________________` `________________________________________162_____________________227_______________________________261_______271_________` `7qpc(A) : ILGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARAgTMKILLKAWRKLIINPNTYATLIGIIWATLHFRLGWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIAC` `:` `7qp9(A) : ILGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARAgTMKILLKAWRKLIINPNTYATLIGIIWATLHFRLGWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIAC` `________________________________________162_____________________227_______________________________261_______271_________` `_______________________________________________________________________________________` `7qpc(A) : GTKMAIITMLLKFVLGPALMIASAYCIRLKSTLFKVAILQAALPQGVVPFVFAKEYNLHPEIISTGVIFGMLIALPTTLAYYFLLDL` `:` `7qp9(A) : GTKMAIITMLLKFVLGPALMIASAYCIRLKSTLFKVAILQAALPQGVVPFVFAKEYNLHPEIISTGVIFGMLIALPTTLAYYFLLDL` `_______________________________________________________________________________________`

Morph

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Domain Pairs

Fixed Domain	Moving Domain	Rotation Angle	Translation (A)	Closure	Bending Residues
1	2	18.6	4.0	89.1	2 - 3 271 - 281	Bending Region Analysis
1	3	9.1	0.8	97.6	30 - 33 261 - 262	Bending Region Analysis
2	3	15.2	0.1	68.5	69 - 70 162 - 223 227 - 228	Bending Region Analysis