Bacteriophage Phix174 Capsid Proteins Gpf, Gpg, Gpj And 3 Four Nucleotides 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bacteriophage Phix174 Capsid Proteins Gpf, Gpg, Gpj And 3 Four Nucleotides 4
  Conformer 1
(PDB) 		2bpa (1)
  Conformer 2
(PDB) 		1cd3 (F)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 384 1.02   8 - 211   235 - 414
2 23 2.28   212 - 234

Sequence


           ________________________________________________________________________________________________________________________ 
 2bpa(1) : SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIP 
         :                                                                                                                          
 1cd3(F) : SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIP 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________205__________________________234______ 
 2bpa(1) : KHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRS 
         :                                                                                                                          
 1cd3(F) : KHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARFGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRS 
           __________________________________________________________________________________205__________________________234______ 

           ________________________________________________________________________________________________________________________ 
 2bpa(1) : NLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSP 
         :                                                                                                                          
 1cd3(F) : NLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSP 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________                                                       
 2bpa(1) : AYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS                                                       
         :                                                                                                                          
 1cd3(F) : AYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS                                                       
           __________________________________________________________________                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.5
Translation
(A) 		-1.0
Closure
(%) 		86.0
Bending Residues
( green ) 		  205 - 212
  234 - 235
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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