Citrate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Citrate Synthase
  Conformer 1
(PDB) 		1iom (A)
  Conformer 2
(PDB) 		1ixe (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 20 0.84   20 - 27   257 - 268
2 279 1.17   5 - 19   28 - 223   271 - 280   317 - 374
3 65 0.55   224 - 256   285 - 316

Sequence


           _______________19______27_______________________________________________________________________________________________ 
 1iom(A) : VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGL 
         :                                                                                                                          
 1ixe(B) : VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGL 
           _______________19______27_______________________________________________________________________________________________ 

           _____________________________________________________________________________________________218________________________ 
 1iom(A) : DLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 
         :                                                                                                                          
 1ixe(B) : DLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 
           _____________________________________________________________________________________________218________________________ 

           ___________256________267_271__________________________________________316______________________________________________ 
 1iom(A) : VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKY 
         :                                                                                                                          
 1ixe(B) : VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAE----sKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKY 
           ___________256________267_271__________________________________________316______________________________________________ 

           ______________                                                                                                           
 1iom(A) : VGELDVPYVPLEAR                                                                                                           
         :                                                                                                                          
 1ixe(B) : VGELDVPYVPLEAR                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 23.5 0.1 36.9   19 - 20   27 - 28   267 - 280 Bending Region Analysis
1 3 31.5 0.6 65.5   256 - 259 Bending Region Analysis
2 3 29.6 0.5 67.5   218 - 224   271 - 286   316 - 319 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification: Hinge

PyMOL Script

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