Fusion Glycoprotein F0

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fusion Glycoprotein F0
  Conformer 1
(PDB) 		5ude (F)
  Conformer 2
(PDB) 		3rrr (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 241 2.57   210 - 211   213 - 461
2 23 3.64   188 - 209   212 - 212
3 38 17.6   467 - 504
4 21 4.57   153 - 173

Sequence


           ____________________________________________________________________________________________________________173_________ 
 5ude(F) : QNITEEFYQSTCSAVSRGYFSALRTGWYTSVITIELSNIKETKCNGTDTKVKLIKQELDKYKNAVTELQLLTQNfLGFLLGVGSAIASGIAVCKVLHLEGEVNKIKNALLSTNKAVVSLS 
         :                                                                                                                          
 3rrr(B) : ************************************************************************************AIASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLS 
           ____________________________________________________________________________________________________________173_________ 

           ________________________209_____________________________________________________________________________________________ 
 5ude(F) : NGVSVLTFKVLDLKSYINNQLLPILNQQSCRISNIETVIEFQQKNSRLLEITREFSVNAGVTTPLSTYMLTNSELLSLINDMPITNDQKKLMSSNVQIVRQQSYSIMCIIKEEVLAYVVQ 
         :                                                                                                                          
 3rrr(B) : NGVSVLTSKVLDLKNYIDKQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQ 
           ________________________209_____________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5ude(F) : LPIYGVIDTPCWKLHTSPLCTTNIKEGSNICLTRTDRGWYCDNAGSVSFFPQADTCKVQSNRVFCDTMNSLTLPSEVSLCNTDIFNSKYDCKIMTSKTDISSSVITSLGAIVSCYGKTKC 
         :                                                                                                                          
 3rrr(B) : LPLYGVIDTPCWKLHTSPLC----------cLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKC 
           ________________________________________________________________________________________________________________________ 

           __________________________________459_______________________________________________________                             
 5ude(F) : TASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKLEGKNLYVKGEPIINYYDPLVFPSDEFDASISQVNEKINQSLAFI********                             
         :                                                                                                                          
 3rrr(B) : TASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLG                             
           __________________________________459_______________________________________________________                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 154.7 -10.7 67.3   209 - 216 Bending Region Analysis
1 3 109.3 25.5 99.9   459 - 467 Bending Region Analysis
4 2 145.6 -27.4 42.3   173 - 189 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 4 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 4

Movement classification:

No Contacts

PyMOL Script

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