Macrophage Mannose Receptor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Macrophage Mannose Receptor 1
  Conformer 1
(PDB) 		5xts (A)
  Conformer 2
(PDB) 		5xtw (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 305 0.59   154 - 169   172 - 196   200 - 487
2 134 0.3   25 - 153   170 - 171   197 - 199

Sequence


           ________________________________________________________________________________________________________________________ 
 5xts(A) : TRQFLIYNEDHKRCVDAVSPSAVQTAACNQDAESQKFRWVSESQIMSVAFKLCLGVPSKTDWVAITLYACDSKSEFQKWECKNDTLLGIKGEDLFFNYGNRQEKNIMLYKGSGLWSRWKI 
         :                                                                                                                          
 5xtw(B) : *RQFLIYNEDHKRCVDAVSPSAVQTAACNQDAESQKFRWVSESQIMSVAFKLCLGVPSKTDWVAITLYACDSKSEFQKWECKNDTLLGIKGEDLFFNYGNRQEKNIMLYKGSGLWSRWKI 
           ________________________________________________________________________________________________________________________ 

           ________152______________169________________________196_________________________________________________________________ 
 5xts(A) : YGTTDNLCSRGYEAMYTLLGNANGATCAFPFKFENKWYADCTSAGRSDGWLWCGTTTDYDTDKLFGYCPLKFEGSESLWNKDPLTSVSYQINSKSALTWHQARKSCQQQNAELLSITEIH 
         :                                                                                                                          
 5xtw(B) : YGTTDNLCSRGYEAMYTLLGNANGATCAFPFKFENKWYADCTSAGRSDGWLWCGTTTDYDTDKLFGYCPLKFEGSESLWNKDPLTSVSYQINSKSALTWHQARKSCQQQNAELLSITEIH 
           ________152______________169________________________196_________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5xts(A) : EQTYLTGLTSSLTSGLWIGLNSLSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKSCVSLNPGKNAKWENLECVQKLGYICKKiPSESDVPTHCPSQWWPYAGHCYKIHRDEKKIQRDALTT 
         :                                                                                                                          
 5xtw(B) : EQTYLTGLTSSLTSGLWIGLNSLSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKSCVSLNPGKNAKWENLECVQKLGYICKK---------------wPYAGHCYKIHRDEKKIQRDALTT 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________________                     
 5xts(A) : CRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMKGKDGYWADRGCEWPLGYICKMKS                     
         :                                                                                                                          
 5xtw(B) : CRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMKGKDGYWADRGCEWPLGYICKMK*                     
           ____________________________________________________________________________________________________                     

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.6
Translation
(A) 		0.1
Closure
(%) 		54.7
Bending Residues
( green ) 		  152 - 155
  169 - 172
  196 - 201
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download