At-Rich Dna-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name At-Rich Dna-Binding Protein
  Conformer 1
(PDB) 		1xcb (A)
  Conformer 2
(PDB) 		3ikt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 109 0.6   76 - 185
2 68 0.83   5 - 75

Sequence


           __________________________________________________________________________75____________________________________________ 
 1xcb(A) : **KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGTRGVGYTVPVLKRELRHILGLNRKWGLCIVG-gRLGSALADYPGFGESFELRGFFDVDPEKVG 
         :                                                                                                                          
 3ikt(A) : GMKVPEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGT---gYTVPVLKRELRHILGLNRKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG 
           __________________________________________________________________________75____________________________________________ 

           _______________________________________________________________________________________                                  
 1xcb(A) : RPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPKWR                                  
         :                                                                                                                          
 3ikt(A) : RPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPKWR                                  
           _______________________________________________________________________________________                                  

Morph