Retinoid X Receptor-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Retinoid X Receptor-Alpha
  Conformer 1
(PDB) 		1dkf (A)
  Conformer 2
(PDB) 		1lbd  
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 171 1.55   236 - 245   283 - 443
2 25 9.72   246 - 282   453 - 456

Sequence


           _____________245__________________________________282___________________________________________________________________ 
 1dkf(A) : SANEDMPVEKILEAELAVEP----------------pNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASASHRSIAVKDGILLATGLHVHRNSAHSAGVGA 
         :                                                                                                                          
 1lbd    : SANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGA 
           _____________240__________________________________277___________________________________________________________________ 

           _____________________________________________________________________________________437______________________________   
 1dkf(A) : IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA*****   
         :                                                                                                                          
 1lbd    : IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT   
           _____________________________________________________________________________________432______________________________   

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		122.5
Translation
(A) 		3.1
Closure
(%) 		45.9
Bending Residues
( green ) 		  245 - 246
  282 - 284
  437 - 456
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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