Saccharopine Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Saccharopine Reductase
  Conformer 1
(PDB) 		1e5l (A)
  Conformer 2
(PDB) 		1e5q (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 310 0.62   4 - 169   189 - 196   208 - 221   226 - 249   351 - 448
2 106 0.69   178 - 182   250 - 350
3 20 1.05   183 - 188   197 - 207   223 - 225

Sequence


           ________________________________________________________________________________________________________________________ 
 1e5l(A) : ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMN 
         :                                                                                                                          
 1e5q(A) : ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMN 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________169______178_______188____195_________207___________221_225________________ 
 1e5l(A) : EIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQIPEADNI 
         :                                                                                                                          
 1e5q(A) : EIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQIPEADNI 
           _____________________________________________169______178_______188____195_________207___________221_225________________ 

           __246____________________________________________________________________________________________________349____________ 
 1e5l(A) : VRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALDTLCATLEEKMQFEEGERDLVMLQ 
         :                                                                                                                          
 1e5q(A) : VRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALDTLCATLEEKMQFEEGERDLVMLQ 
           __246____________________________________________________________________________________________________349____________ 

           _________________________________________________________________________________________                                
 1e5l(A) : HKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKVVA                                
         :                                                                                                                          
 1e5q(A) : HKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKVVA                                
           _________________________________________________________________________________________                                

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 16.7 -0.8 94.0   169 - 182   246 - 250   349 - 351 Bending Region Analysis
1 3 19.6 0.2 95.2   188 - 189   195 - 197   207 - 209   221 - 223   225 - 226 Bending Region Analysis
3 2 17.2 -0.3 100.0   178 - 183 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 3 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 3

Movement classification:

No Contacts

PyMOL Script

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