Sensor Protein Fixl

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sensor Protein Fixl
  Conformer 1
(PDB) 		1xj4 (A)
  Conformer 2
(PDB) 		1k3l (B)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 27 5.18   171 - 197
2 25 4.91   198 - 222

Sequence


           ____________________________________________________________________________________________197_________________________ 
 1xj4(A) : ***************************************************DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIV 
         :                                                                                                                          
 1k3l(B) : KPKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKERALIDMYIEGIADLGEMILLLPVCPPEEKDAKLAL 
           _____________________________________________________________________________________________98_________________________ 

           _____________________________________________________________________________________________________                    
 1xj4(A) : TGKRRDGTTFPMHLSIGEMQSGGEPYFTGFVRDLTEH****************************************************************                    
         :                                                                                                                          
 1k3l(B) : IKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVEELDSSLISSFPLLKA--LKTRISNLPTVKKFLQPGSPRKPPMDEKSLEEARKIFRF                    
           _____________________________________________________________________________________________________                    

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		129.5
Translation
(A) 		-3.3
Closure
(%) 		26.7
Bending Residues
( green ) 		  197 - 198
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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