Sialic Acid-Binding Periplasmic Protein Siap

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sialic Acid-Binding Periplasmic Protein Siap
  Conformer 1
(PDB) 		2xwv (A)
  Conformer 2
(PDB) 		2cey (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 166 0.45   4 - 80   92 - 125   212 - 253   292 - 304
2 25 0.43   81 - 91   126 - 126   210 - 211   281 - 291
3 109 0.66   127 - 209   255 - 280

Sequence


           ______________________________________________________________________________80_________91_____________________________ 
 2xwv(A) : ADYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFALPYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLS 
         :                                                                                                                          
 2cey(A) : ADYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFALPYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLS 
           ______________________________________________________________________________80_________91_____________________________ 

           __125___________________________________________________________________________________211_____________________________ 
 2xwv(A) : QAYNGTRQTTSNRAINSIADMKGLKLRVPNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDLQKVVKDAAEN 
         :                                                                                                                          
 2cey(A) : QAYNGTRQTTSNRAINSIADMKGLKLRVPNAATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDLQKVVKDAAEN 
           __125___________________________________________________________________________________211_____________________________ 

           _______250___________________________280________291__________________                                                    
 2xwv(A) : AAKYHTKLFVDGEKDLVTFFEKQGVKITHPDLVPFKESMKPYYAEFVKQTGQKGESALKQIEAINPHHH                                                    
         :                                                                                                                          
 2cey(A) : AAKYHTKLFVDGEKDLVTFFEKQGVKITHPDLVPFKESMKPYYAEFVKQTGQKGESALKQIEAINP***                                                    
           _______250___________________________280________291__________________                                                    

Morph

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 10.3 0.4 72.2   80 - 81   91 - 92   125 - 126   211 - 213   291 - 293 Bending Region Analysis
1 3 29.1 0.2 99.8   125 - 127   250 - 255 Bending Region Analysis
3 2 19.3 0.2 41.3   126 - 127   209 - 210   280 - 281 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 3 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 3

Movement classification:

No Contacts

PyMOL Script

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