Small-Conductance Mechanosensitive Channel

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Small-Conductance Mechanosensitive Channel
  Conformer 1
(PDB) 		2oau (C)
  Conformer 2
(PDB) 		2oau (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 69 0.17   110 - 178
2 21 0.25   89 - 109
3 100 0.29   179 - 278
4 60 0.09   29 - 88

Sequence


           _________________________________________________________85___________________107_______________________________________ 
 2oau(C) : YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVL 
         :                                                                                                                          
 2oau(B) : YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVL 
           _________________________________________________________85___________________107_______________________________________ 

           _____________________________178________________________________________________________________________________________ 
 2oau(C) : SVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGI 
         :                                                                                                                          
 2oau(B) : SVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGI 
           _____________________________178________________________________________________________________________________________ 

           ______________                                                                                                           
 2oau(C) : SFPYPQMDVNFKRV                                                                                                           
         :                                                                                                                          
 2oau(B) : SFPYPQMDVNFKRV                                                                                                           
           ______________                                                                                                           

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 9.6 -0.5 99.7   107 - 110 Bending Region Analysis
1 3 8.0 0.7 64.1   178 - 184 Bending Region Analysis
4 2 9.8 -0.4 100.0   85 - 89 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 4 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 4

Movement classification:

No Contacts

PyMOL Script

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