call loadScript jmol\core\package.js
call loadScript jmol\core\core.z.js -- required by ClazzNode
Jmol JavaScript applet myJmol_object__83645226206831__ initializing
getValue debug = null
getValue logLevel = null
getValue allowjavascript = null
AppletRegistry.checkIn(myJmol_object__83645226206831__)
viewerOptions:
{ "name":"myJmol_object","applet":true,"documentBase":"http://morphit-pro.cmp.uea.ac.uk/MorphItPro/faces/results_docking.xhtml?id=1913","platform":"J.awtjs2d.Platform","fullName":"myJmol_object__83645226206831__","display":"myJmol_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol.MyStatusListener object]","codeBase":"http://morphit-pro.cmp.uea.ac.uk/MorphItPro/faces/jmol/j2s/","syncId":"83645226206831","bgcolor":"#FFFFFF" }
(C) 2012 Jmol Development
Jmol Version: 13.3.7 $Date: 2013-09-30 21:28:36 -0500 (Mon, 30 Sep 2013) $
java.vendor: j2s
java.version: 0.0
os.name: j2s
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:myJmol_object (signed)
starting HoverWatcher_1
getValue emulate = null
defaults = "Jmol"
getValue boxbgcolor = null
getValue bgcolor = #FFFFFF
backgroundColor = "#FFFFFF"
getValue ANIMFRAMECallback = null
getValue APPLETREADYCallback = Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
getValue ATOMMOVEDCallback = null
getValue CLICKCallback = null
getValue ECHOCallback = null
getValue ERRORCallback = null
getValue EVALCallback = null
getValue HOVERCallback = null
getValue LOADSTRUCTCallback = null
getValue MEASURECallback = null
getValue MESSAGECallback = null
getValue MINIMIZATIONCallback = null
getValue PICKCallback = null
getValue RESIZECallback = null
getValue SCRIPTCallback = null
getValue SYNCCallback = null
getValue STRUCTUREMODIFIEDCallback = null
getValue doTranslate = null
language=en_US
getValue popupMenu = null
getValue script = null
Jmol applet myJmol_object__83645226206831__ ready
call loadScript jmol\core\corescript.z.js
starting QueueThread0_2
script 1 started
call loadScript jmol\core\corestate.z.js
FileManager.getAtomSetCollectionFromFile(../output-files/2HLE.pdb)
starting HoverWatcher_3
FileManager opening 1 http://morphit-pro.cmp.uea.ac.uk/MorphItPro/output-files/2HLE.pdb
The Resolver thinks Pdb
call loadScript jmol\core\corebio.z.js
call loadScript jmol\J\render\MeshRenderer.js -- required by J.renderbio.BioShapeRenderer
call loadScript jmol\J\shape\Mesh.js
call loadScript jmol\J\util\Hermite.js
SIGNALING PROTEIN 03-MAY-01 1IKO
CRYSTAL STRUCTURE OF THE MURINE EPHRIN-B2 ECTODOMAIN
call loadScript jmol\core\coresym.z.js
biomolecule 1: number of transforms: 1
Setting space group name to P 65 2 2
Time for openFile(../output-files/2HLE.pdb): 1696 ms
reading 57024 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
24 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: B
model 1.2 alternative locations: B
model 1.3 alternative locations: B
model 1.4 alternative locations: B
model 1.5 alternative locations: B
model 1.6 alternative locations: B
model 1.7 alternative locations: B
model 1.8 alternative locations: B
model 1.9 alternative locations: B
model 1.10 alternative locations: B
model 1.11 alternative locations: B
model 1.12 alternative locations: B
model 1.13 alternative locations: B
model 1.14 alternative locations: B
model 1.15 alternative locations: B
model 1.16 alternative locations: B
model 1.17 alternative locations: B
model 1.18 alternative locations: B
model 1.19 alternative locations: B
model 1.20 alternative locations: B
model 1.21 alternative locations: B
model 1.22 alternative locations: B
model 1.23 alternative locations: B
model 1.24 alternative locations: B
Default Van der Waals type for model set to Jmol
57024 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
SIGNALING PROTEIN 03-MAY-01 1IKO
CRYSTAL STRUCTURE OF THE MURINE EPHRIN-B2 ECTODOMAIN
24 models
call loadScript jmol\core\corescript2.z.js
call loadScript jmol\J\thread\AnimationThread.js
starting AnimationThread_5