call loadScript jmol\core\package.js
call loadScript jmol\core\core.z.js -- required by ClazzNode
Jmol JavaScript applet myJmol_object__890402236557621__ initializing
getValue debug = null
getValue logLevel = null
getValue allowjavascript = null
AppletRegistry.checkIn(myJmol_object__890402236557621__)
viewerOptions:
{ "name":"myJmol_object","applet":true,"documentBase":"http://morphit-pro.cmp.uea.ac.uk/MorphItPro/faces/results_docking.xhtml?id=2009","platform":"J.awtjs2d.Platform","fullName":"myJmol_object__890402236557621__","display":"myJmol_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol.MyStatusListener object]","codeBase":"http://morphit-pro.cmp.uea.ac.uk/MorphItPro/faces/jmol/j2s/","syncId":"890402236557621","bgcolor":"#FFFFFF" }
(C) 2012 Jmol Development
Jmol Version: 13.3.7 $Date: 2013-09-30 21:28:36 -0500 (Mon, 30 Sep 2013) $
java.vendor: j2s
java.version: 0.0
os.name: j2s
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:myJmol_object (signed)
starting HoverWatcher_1
getValue emulate = null
defaults = "Jmol"
getValue boxbgcolor = null
getValue bgcolor = #FFFFFF
backgroundColor = "#FFFFFF"
getValue ANIMFRAMECallback = null
getValue APPLETREADYCallback = Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
getValue ATOMMOVEDCallback = null
getValue CLICKCallback = null
getValue ECHOCallback = null
getValue ERRORCallback = null
getValue EVALCallback = null
getValue HOVERCallback = null
getValue LOADSTRUCTCallback = null
getValue MEASURECallback = null
getValue MESSAGECallback = null
getValue MINIMIZATIONCallback = null
getValue PICKCallback = null
getValue RESIZECallback = null
getValue SCRIPTCallback = null
getValue SYNCCallback = null
getValue STRUCTUREMODIFIEDCallback = null
getValue doTranslate = null
language=en_US
getValue popupMenu = null
getValue script = null
Jmol applet myJmol_object__890402236557621__ ready
call loadScript jmol\core\corescript.z.js
starting QueueThread0_2
script 1 started
call loadScript jmol\core\corestate.z.js
FileManager.getAtomSetCollectionFromFile(../output-files/2X9A.pdb)
starting HoverWatcher_3
FileManager opening 1 http://morphit-pro.cmp.uea.ac.uk/MorphItPro/output-files/2X9A.pdb
The Resolver thinks Pdb
call loadScript jmol\core\corebio.z.js
call loadScript jmol\J\render\MeshRenderer.js -- required by J.renderbio.BioShapeRenderer
call loadScript jmol\J\shape\Mesh.js
call loadScript jmol\J\util\Hermite.js
VIRAL PROTEIN 15-MAR-10 2X9B
THE FILAMENTOUS PHAGES FD AND IF1 USE DIFFERENT INFECTION
MECHANISMS
call loadScript jmol\core\coresym.z.js
biomolecule 1: number of transforms: 1
biomolecule 2: number of transforms: 1
Setting space group name to P 62 2 2
Time for openFile(../output-files/2X9A.pdb): 1592 ms
reading 27240 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
24 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
27240 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
VIRAL PROTEIN 15-MAR-10 2X9B
THE FILAMENTOUS PHAGES FD AND IF1 USE DIFFERENT INFECTION
MECHANISMS
24 models
call loadScript jmol\J\thread\AnimationThread.js
starting AnimationThread_5